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Fix broken Javadoc links, replace deprecated methods in usage examples, and add a missing method to HelpFormatter #1528

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Fix broken Javadoc links, replace deprecated methods in usage examples, and add a missing method to HelpFormatter

Fix broken Javadoc links, replace deprecated methods in usage examples, and add a missing method to HelpFormatter #1528

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Job Run time
Analyze (java)
1m 51s
1m 51s