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Contents
Foreword
Installing Python
Editor and Integrated development environments
Differences between Python2 and Python3
Working directory
Using Terminal
Chapter 1
1.1 Objects in Python
1.2 Reserved terms for the system and names
1.3 Enter comments in the code
1.4 Types of data
1.5 File format
1.6 Operators
1.7 Indentation
1.8 Quotation marks
Chapter 2
2.1 Numbers
2.2 Container objects
Tuples
Lists
Dictionaries
Sets
Strigs
Files
2.3 Immutability
2.4 Converting formats
Chapter 3
3.1 Functions
3.1.1 Some predefined built_in functions
Obtain informations regarding a function
3.2 Create your own functions
3.3 Salvare i propri moduli e file
Chapter 4
4.1 Conditional instructions
4.1.1 if
4.1.2 if-else
4.1.3 elif
4.2 Loops
4.2.1 for
4.2.2 while
4.2.3 continue and break
4.2.4 range()
4.3 Extend our functions with conditional instructions
4.4 map() and filter() functions
4.5 The lambda function
4.6 Scoping
Chapter 5
5.1 Object Oriented Programming
5.2 Modules
5.3 Methods
5.4 List comprehension
5.5 Regular Expressions
5.6 User input
5.7 Errors and Exceptions
Chapter 6
6.1 Importing files
6.2 .csv format
6.3 From the web
6.4 In JSON
6.5 Other formats
Chapter 7
7.1 Libraries for data mining
7.2 pandas
7.2.1 pandas: Series
7.2.2 pandas: dataframes
7.2.3 pandas: importing and exporting data
7.2.4 pandas: data manipulation
7.2.5 pandas: missing values
7.2.6 pandas: merging two datasets
7.2.7 pandas: basic statistics
Chapter 8
8.1 SciPy
8.2 Numpy
8.2.1 Numpy - generating random numbers and seeds
Chapter 9
9.1 Matplotlib
Chapter 10
10.1 scikit-learn
Managing dates
Data sources
Conclusions
Foreword
My goal is to accompany a reader who is starting to study this programming language, showing her
through basic concepts and then move to data mining. We will begin by explaining how to use Python
and its structures, how to install Python, which tools are best suited for a data analyst work, and then
switch to an introduction to data mining packages. The book is in any case an introduction. Its aim is
not, for instance, to fully explain topics such as machine learning or statistics with this programming
language, which would take at least twice or three times as much as this entire book. The aim is to
provide a guidance from the first programming steps with Python to manipulation and import of
datasets, to some examples of data analysis.
To be more precise, in the Getting Started section, we will run through some basic installation
concepts, tools available for programming on Python, differences between Python2 and Python3, and
setting up a work folder.
In Chapter 1, we will begin to see some basic concepts about creating objects, entering comments,
reserved words for the system, and on the various types of operators that are part of the grammar of
this programming language.
In Chapter 2, we will carry on with the basic Python structures, such as tuples, lists, dictionaries,
sets, strings, and files, and learn how to create and convert them.
In Chapter 3 we will see the basics for creating small basic functions, and how to save them.
Chapter 4 deals with conditional instructions that allow us to extend the power of a function as well
as some important functions.
In Chapter 5 we will keep talking about some basic concepts related to object-oriented
programming, concept of module, method, and error handling.
Chapter 6 is dedicated to importing files with some of the basic features. We will see how to open
and edit text files, in .csv format, and in various other formats.
Chapters 7 to 10 will deal with Python's most important data mining packages: Numpy and Scipy for
mathematical functions and random data generation, pandas for dataframe management and data
import, Matplotlib for drawing charts and scikit-learn for machine learning. With regard to scikit-
learn, we will limit ourselves to provide a basic idea of the code of the various algorithms, without
going, given the complexity of the subject, into details for the various techniques.
Finally, in Conclusions, we will summarize the topics and concepts of the book and see the
management of dates and some of the data sources for our tests with Python.
This book is intended for those who want to get closer to the Python programming language from a
data analysis perspective. We will therefore focus on the most used packages for data analysis, after
the introduction to Python's basic concepts. To download the code, go more into depth for some topics
and for more information about the practical part you can visit my website, Datawiring.me. From the
site homepage you can also subscribe to my newsletter to keep track of news in the code and last
posts.
Given the introductory nature of the course, in any case, the advice is to write the code manually to
get familiar with I and being able to handle it, especially for readers who have just begun
programming.
Installing Python
Python can be easily installed from https://www.python.org/downloads/ in both version 2 or 3. It is
already preinstalled on Unix systems, so if we have a Mac or Linux, we can simply access terminal
and type "python".
From the python.org website, simply download the most suitable version for your operating system
and proceed with installation following the on-screen instructions.
Editor and Integrated development environments
There are many ways to use a programming language, such as Python. We can simply write the first
lines from the terminal: then, once the programming language is installed, if necessary (depending on
the operating system you are using there will be some versions of Python already integrated) we will
open a terminal window and digit its name.
There are many free and paid editors that differ in their completeness, scalability, ease of use. Among
the most used editors are Sublime Text, Text Wrangler, Notepad++ (for Windows), or TextMate (for
Mac). But we can also use a simple text editor.
As for integrated development environments, or IDEs, Python-specific ones are for instance
Wingware, Komodo, Pycharm, Emacs, but there are really lots of them. This kind of tools provide
tools to simplify work, such as self-completion, auto-editing and auto-indentation, integrated
documentation, syntax highlighting, code-folding (the ability to hide some pieces of code while you
Works on other parts), and support for debugging.
Spyder (which is included in Anaconda) and Jupyter are the most used in Data Science, along with
Canopy. A useful tool for Jupyter is nbviewer, which allows the exchange of Jupyter's .ipynb files,
which can be downloaded at http://nbviewer.jupyter.org and can also be linked to Github.
As for Anaconda, a very useful tool as it also features Jupyter, it can be downloaded for our operating
system from this link. The list of resources that are installed with Anaconda (over 100 packets for
data mining, maths, data analysis and algebra) can be viewed opening a terminal window and then
typing:
conda list
We can program Python through one or more of these tools, depending on our habits and what we
want to do. Spyder and Jupyter are very common for data mining, which are both available once
Anaconda is installed. These are tools that can be used and installed individually (eg Jupyter can be
tested from this link), but installing Anaconda makes it easy to work, as it provides us with a whole
host of tools and packages.
The Python code can then be run directly from the terminal, or saved as .py file and then run from
these other editors. What tells us we are running the Python code is the ">>>" symbol at the beginning
of the prompt.
To best follow the examples in this book I recommend installing Anaconda from the Continuum.io
website and using Jupyter. Anaconda automatically installs a set of packages and modules that we
will then use and we will not have to reinstall each time from the terminal.
Anaconda's main screen
Differences between Python2 and Python3
Python is released in two different versions, Python2 and Python3. Python2 was born in 2000
(currently the latest release is 2.7), and its support is expected until 2020. It is the historical and most
complete version.
Python3 was released in 2008 (current version is 3.6). There are many libraries for Python3, but not
all of them have been yet converted for this release from Python2.
The two versions are very similar but feature some differences, for example with regard to
mathematical operations:
Python 2.7
5/2
2
Python 3.5.2
5/2
2.5
To get the correct result in Python2 we have to specify the decimal as follows:
5.0/2
2.5
# or like this
5/2.0
2.5
float(5)/2
2.5
To keep the two versions of Python together, you can also import Python into a form called future,
allowing to import Python3 functions into Python2.
2.5
For a closer look at the differences between the two versions of Python, you can access this online
resource.
What is the difference between the two versions and why choose one or the other? Python2 represents
the best-defined and stable version, while Python3 represents the future of the language, although for
some things the two versions do not coincide. In the first part of this text we will always try to
highlight the differences between the two versions. From chapter 7 onwards, the section on data
mining packages, we will use Python3.
Working directory
Before we start working, we set the work directory on our computer. Setting up a work directory
means setting up a home for our scripts and our files, where Python will automatically look at when
we ask it to import a file or run a script. To find out what our work directory is, simply type this on
the Python shell:
import os
os.getcwd()
‘~/valentinaporcu'
# to edit the working directory, we use the following notation, inserting the new directory in
parentheses
os.chdir(“/~/Python_script”)
os.getcwd()
‘~/Python_script’
Setting up a working directory means that when we're going to import a file that is in our workbook,
we can simply type the name followed by extension and quotation marks in this format:
“file_name.extension”
For instance:
"dataframe_data_collection1.csv"
Python will directly check if there is a file with that name inside that folder and it will import it.
Same thing when we save a Python file by typing it on our computer: Python will automatically put it
in that folder. Even when we run a Python script, as we will see, we will have to access the folder
where the script (the working directory or another one) is located directly from the terminal.
If we want to import a file that is not in the working directory but elsewhere on our computer or on
the web, we can still do this, this time by entering the full file address:
“complete_address.file_name.extension”
For instance:
"/Users/vp/Downloads/dataframe_data1.csv"
Using Terminal
Let us see how to run Python scripts. First, let us open a terminal window.
As you can see, we see the dollar symbol ($) not the Python shell symbol (>>>). We can view the list
of our folders and files with the ls command.
cd Python_test
In the folder where I moved, Python_test, I find my Python scripts, that is, the .py files that I can run
by writing like this:
python test.py
a name
a type
an ID
Object names consist of only alphanumeric characters and underscores, so all characters between A-
Z, a-z, 0-9, and _. Type is the type of object, such as string, numeric, or boolean. The ID is a number
that uniquely identifies our object.
The objects remain inside the computer memory and can be retrieved. When no longer needed, a
garbage collector mechanism frees up busy memory.
1.2 Reserved terms for the system and names
Python has a set of words that are reserved for the system and cannot be used by users as names for
objects or functions. Such words are:
and as assert break class continue def del elif else except exec False finally for from global if
import in is lambda None not or import in pass print raise return True try while with yeld
These words cannot be used as names for our objects. Object names in R must be subject to some
rules:
# comment no. 1
print(“Hello World”) # comment no. 2
To write a comment on multiple lines, we can also use three times the quotation marks, like this:
“””
comment line 1
comment line 2
comment line 3
“””
1.4 Types of data
Python data can be of various types. We can summarize them in the table below:
To know what type an object is, we can always use the type() function:
# we create an x object
x=1
type(x)
<class 'int'>
# a y object
y = 20.75
type(y)
<class 'float'>
# and a z object
z = “test”
type(z)
<class 'str'>
1.5 File format
Once you have created a script in Python, you need to save it with a .py extension. Typically, when it
comes to complex scripts, we will create a script on an editor that we will then run. A .py script can
be written by one of the different editors we've seen, even a normal text editor, and then renamed with
.py extension.
1.6 Operators
On Python we find a series of operators, divided into several groups:
arithmetic
of assignment
of comparison
logical
bitwise
of membership
of identity
Beside these operators, there is also a hierarchy that marks the order in which they are used.
Mathematical operators
When we open Python, the simplest thing we can do is use it to perform math operations, for which
we use mathematical operators:
10+7
17
15-2
13
2*3
6
10/2
5
3**3
27
10/3
3
25//7
3
Operator Description
> greater than
< lower than
== equal to
>= greater or equal
<= lower or equal
!= different
is identity
is not non identity
in exists in
not in does not exists in
These operators are used to test relationships between objects. Let us see some examples:
x=5
y = 10
x>y
False
# the output is a logical vector that tells us that x is not greater than y
# let us see if x is less than y
x<y
True
z=5
z == x
True
z != y
True
# we create a tuple
v1 = (1,2,3,4,5,6,7)
2 in v1
True
8 not in v1
True
7 not in v1
False
If we compare text strings, Python counts the characters so in this case the </> symbol is meant as
"how many characters in string1 is greater than the number of characters in string2?" For instance:
"valentina" > "laura"
True
Bitwise operators
Bitwise operators are useful in specifying more than one condition when, for example, we need to
extract data from an object, such as a dataset.
Operator Description
& and
| or
^ xor
~ bitwise not
<< left shift
>> right shift
# and also
3<4&4>3
True
3<4|4>3
True
3 == 4 or 4 > 3
True
Assignment operators
x %= y (corresponds
modulo and
%= to a x = x%y)
reassignment
x **= y
exponentation and (corresponds to a x
**=
reassignment = x**y)
x//=y (corresponds
floor division and
//= to a x = x//y)
reallocation
x = 10
x=x+5
15
# let’s try “+=“
x += 5
20
x -= 5
15
x *= 3
45
x /= 3
15
x **= 2
225
x //= 2
x
112
Each time Python performs the operation and records the result again in the x object
Operators order
When it comes to math operators, we have to consider that there is a priority in case brackets are not
inserted. There are a number of priority rules that govern which operation is to be performed before
and after (think of mathematical operations where multiplication takes precedence over addiction).
multiply_xy(5,6)
30
1.8 Quotation marks
Quotation marks in R are mostly used to define strings and can be single, double or triple. Triple ones
are sued to wrap words and insert comment on multiple lines, for example, to create documentation
within a function that we are creating.
ex3 = “””
text string 1
text string 2
text string 3
“””
"'To a safe asylum which has been found for you, and where
you may spend the rest of your days in penitence and
prayer.'"
"I thought I knew what that meant well enough, but I did
not care. At midnight I was taken from my prison
blindfolded, and carried down stairs and into the fresh air. I
was placed in a litter and traveled for two days, I think,
stopping now and then in some secluded place for a little
rest and refreshment. On the third day there was an
unexpected end put to my journey. We were attacked by
outlaws. My two conductors fled, as I guessed, without
exchanging many blows. With many jests, but not unkindly,
the robbers drew me out of my litter. I was so stiff with
sitting I could hardly stand upright."
"'Why, 'tis a poor feeble old woman!' said the leader of the
gang. 'Hey, what! Cannot you walk?' he asked, as I tried to
take a step."
"'My feet are tied' I managed to say, and so they had been,
whether by command to my attendants or to save
themselves trouble, I do not know."
"'Ay, ay!' said she. 'Meat and drink you shall have, and as to
lodging, we will see what my master says. He is here now,
my good dame?'"
"'Your husband was a gallant young man,' said he. 'I knew
him well, but knew not what had become of him. I will
consider your case and see what shall be best for you.'"
"Then you must have been sent away just before the
convent was broken up."
I heard afterward that she died, after all, before poor old
Martha. But she was ready to go, and it was a blessed
release. How little I guessed, when I used to look at our
house at Dartford and speculate as to the rooms I was not
allowed to enter, that my old friend and teacher was pining
away her young life in one of them. They meant it for
mercy, and I dare say ran a great risk in keeping her where
they did, but it was a doubtful mercy, after all.
CHAPTER XIII.
"But who has built all these great arks?" I ventured to ask,
looking with amazement at the high banks and heavy
stone-work, which I could now see quite plainly.
"Why, that is more than I can tell," was the answer, "but if
all goes well, I hope we shall find ourselves at the
Boomtzees to-morrow morning. You know, my friend, this is
not a channel to be walked over blindfold."
And then the language! I could not understand it, and yet it
sounded as if I ought to know every word. Presently we
turned off the quay, the Boomtzees as they call it, and went
through two or three narrow streets, and over more bridges
than I ever counted afterward. At last we came into a kind
of little place or square where grass was growing, and
flowers blooming in little parterres like the figures in a
Persian rug. This square was surrounded by neat houses, as
fantastically decorated as those we had seen before, and
looking as if no dust or smoke had ever dared to come near
them. At the largest and handsomest of these, my uncle
stopped.
"This is our house," said he. "Pray God we find all well."
"Ay, and with good reason," answered Avice. "After all our
fears, Garrett has come home safe and sound, and not
much the worse for his captivity among the Moors."
Avice left the room, and presently came back with an armful
of clean linen and a gown. She would help me to dress, but
that I would not allow, so bidding me come down when I
was ready, she left me. I dressed myself at last, and went
back to the room I had left, where I found a table spread
with all sorts of good things, while a tall, handsome,
solemn-looking maid-servant, wearing the same sort of
head ornament I had seen in the street, kept bringing still
more. Here I was introduced to my cousin's husband, a
stately gentleman, but looking worn and sunburned. I had
found my appetite by this time, and did full justice to the
dainties before me.
"Yes, very well; and her new babe. The little lad hath had
the ague, but is recovered—so she writes."
"I wonder who doth not," said mine uncle, under his breath.
"I had traded with them before now, and could speak their
language, after a fashion," continued my cousin Garrett. "I
had once been able to do some service to a merchant of
Tripoli, and I thought if I could get speech of him, he might
do me a good turn. At last, after long waiting, I succeeded
in sending him word, and in a few days I found myself in his
house and treated with all kindness. He found means for me
to go to Smyrna, and from thence the way home was easy."
"It was well you fell into the hands of the Moors, and not
into the claws of the Inquisition," said my uncle. "Strange
that one should find better treatment at the hands of
heathens and infidels than of those who call themselves
Christians."
"'Tis but little finery the poor maid hath brought with her,"
answered my uncle, smiling. "Our flight was too secret and
sudden for that. But I will walk with you, and we will leave
the women to gossip to their heart's content."
"As if they would not gossip worse than any women when
they get two or three together," said Avice, laughing. "But
sit you down, and rest, Loveday. I will but give some
orders, and be with you again directly."
The room where I sat was wide and high, handsomer than
any in Suffolk house, and fairly crowded with carved and
inlaid cabinets, damask-covered chairs and little tables. The
projecting window was partly veiled by broad white
curtains, and just above it was an arrangement of bright
mirrors, jointed curiously together, whereof I could not at
first perceive the use, but I presently discovered that by it
one was enabled to see, without being seen, all that went
on in the street. The little square or place before the house
was green as emerald, and not a speck or stick was to be
seen on its surface, while a pond in the midst gave
entertainment to a pair of swans and some white ducks. On
the highest chimney of a fine house across the square was
a pile of rubbish, at which I was wondering, when I saw a
long-legged and long-billed bird alight near it, and begin
strutting up and down in a pompous way, that reminded me
of the old beadle in our parish church in London.
"No wonder, if they are such good creatures. But, aunt, are
all the people here as neat in their ways as my cousin? The
house is so clean, I am almost afraid to move for fear of
soiling something."
"Oh, yes. Her husband is one of the best of men, and she
hath four lovely babes—the last I have not seen. They are
not rich, nor ever will be, at least in this world's goods, but
they have treasure in Heaven, ay and in this world also. I
never saw a better ordered family of children. 'Tis a great
grief to Garrett and Avice that they have none; but, as I tell
them, there is time enough, and it may be better after all,"
said my aunt, sighing. "In a gale, those are best off who
spread the least sail."
"Not that I know of," replied my aunt, with that sweet, wise
smile that I remembered so well. "The Master, at least, has
promised us none, and what right have we to expect peace
with His worst enemy. Mark my word, child, if the day ever
does come that the church and the world have no
controversy, that will be the worst day the church will ever
see. But now tell me of our friends, the Davises. Were they
not greatly relieved to hear of Margaret's safety?"
But I must not linger over the history of those quiet, happy
days; for happy they were spite of the secret grief and
longing which no one guessed—or so I believed. I had
thought the matter over and over, and had gained all the
light I could from an honest Study of Holy Scripture, and I
could not see that I was guilty of any sin in loving Walter
Corbet. It was not sacrilege, as I had first believed, since no
word in the Bible prohibited priests from marrying. I might
make my love a sin, it was true, if I let it make me gloomy
or discontented; if I brooded over it and occupied my
thoughts therewith so as to interfere with my duties to God
or man. But this I was humbly resolved not to do. My Father
had laid this cross upon me, and I would bear it till he saw
fit to remove it, or to change it for that crown which he hath
promised to them that endure to the end. I had read some
romances and tales of maids who died for love or had
unworthily cast themselves away. The first might perhaps
come—the last I thought never. It seemed to me, and does
so seem now, that the very fact of a woman's loving
honestly would make her self-respecting and discreet.
Passion might make women act unworthily—true love
never!
Margaret Hall was, if not rich, yet well-to-do. Her school had
grown to as large a size as she could manage, and both she
and her husband would have liked me to take it off her
hands, and have her free to help her husband in correcting
of the press and the like. The work would have suited me
well enough, but my uncle would not hear of my leaving
him, and indeed showed more of his old choleric temper on
the occasion than I had yet seen. Of course his will was my
law, so I said no more about the matter.
At last however, I found work nearer home. There was an
English congregation in Rotterdam, at present without a
pastor. Many of them were poor people who had fled on
account of their faith, losing all for the sake of the gospel. I
soon got in the way of visiting among them, and finding
there were a good many children, I proposed to my uncle
with some diffidence—not knowing how he would like it—
that I should set up a small school for the little maids,
where they could learn to read, sew and spin, and other
such arts as should help them to earn a living. I was
pleasantly surprised to find him take up the idea with great
pleasure, saying that he had often wished some one would
do that work. The parents of the children were equally
pleased. My uncle found out and furnished a small room,
and I discovered a suitable assistant—such a person as we
now should call a dame—in an elderly widow without
children, a part of whose house we rented for the school. I
soon had my rooms full of the little English girls, and there I
regularly spent half my day overseeing the work, teaching
the little things to read the Scriptures, and now and then
moderating a little Dame Webster's zeal for discipline.
CHAPTER XIV.
ANOTHER HOME.
Garrett and Avice had gone down to visit Katherine, and the
maids had seized on the chance for a perfect carnival or
orgy of brushing and scrubbing, though the house was
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