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Python High Performance Programming 1st Edition
Gabriele Lanaro Digital Instant Download
Author(s): Gabriele Lanaro
ISBN(s): 9781783288458, 1783288450
Edition: 1
File Details: PDF, 1.91 MB
Year: 2013
Language: english
Table of Contents
Python High Performance Programming
Credits
About the Author
About the Reviewers
www.PacktPub.com
Support files, eBooks, discount offers and more
Why Subscribe?
Free Access for Packt account holders
Preface
What this book covers
What you need for this book
Who this book is for
Conventions
Reader feedback
Customer support
Downloading the example code
Errata
Piracy
Questions
1. Benchmarking and Profiling
Designing your application
Writing tests and benchmarks
Timing your benchmark
Finding bottlenecks with cProfile
Profile line by line with line_profiler
Optimizing our code
The dis module
Profiling memory usage with memory_profiler
Performance tuning tips for pure Python code
Summary
2. Fast Array Operations with NumPy
Getting started with NumPy
Creating arrays
Accessing arrays
Broadcasting
Mathematical operations
Calculating the Norm
Rewriting the particle simulator in NumPy
Reaching optimal performance with numexpr
Summary
3. C Performance with Cython
Compiling Cython extensions
Adding static types
Variables
Functions
Classes
Sharing declarations
Working with arrays
C arrays and pointers
NumPy arrays
Typed memoryviews
Particle simulator in Cython
Profiling Cython
Summary
4. Parallel Processing
Introduction to parallel programming
The multiprocessing module
The Process and Pool classes
Monte Carlo approximation of pi
Synchronization and locks
IPython parallel
Direct interface
Task-based interface
Parallel Cython with OpenMP
Summary
Index
Python High Performance
Programming
Python High Performance
Programming
Copyright © 2013 Packt Publishing
Every effort has been made in the preparation of this book to ensure
the accuracy of the information presented. However, the information
contained in this book is sold without warranty, either express or
implied. Neither the author, nor Packt Publishing, and its dealers and
distributors will be held liable for any damages caused or alleged to
be caused directly or indirectly by this book.
Livery Place
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ISBN 978-1-78328-845-8
www.packtpub.com
Gabriele Lanaro
Reviewers
Daniel Arbuckle
Mike Driscoll
Albert Lukaszewski
Acquisition Editors
Owen Roberts
Harsha Bharwani
Commissioning Editor
Shaon Basu
Technical Editors
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Faisal Siddiqui
Project Coordinator
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Proofreader
Linda Morris
Indexer
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Production Coordinators
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Manu Joseph
Cover Work
Pooja Chiplunkar
About the Author
Gabriele Lanaro is a PhD student in Chemistry at the University of
British Columbia, in the field of Molecular Simulation. He writes high
performance Python code to analyze chemical systems in large-
scale simulations. He is the creator of Chemlab—a high performance
visualization software in Python—and emacs-for-python—a
collection of emacs extensions that facilitate working with Python
code in the emacs text editor. This book builds on his experience in
writing scientific Python code for his research and personal projects.
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In this book, you will learn, in a step-by-step method how to find and
speedup the slow parts of your programs using basic and advanced
techniques.
This book starts from the basics and builds on them, therefore, I
suggest you to move through the chapters in order.
The book was written and tested on Ubuntu 13.10. The examples
will likely run on Mac OS X with little or no changes.
However, the scope of this book is broad and the concepts can be
applied to any domain. Since the book addresses both basic and
advanced topics, it contains useful information for programmers with
different Python proficiency levels.
Conventions
In this book, you will find a number of styles of text that distinguish
between different kinds of information. Here are some examples of
these styles, and an explanation of their meaning.
def visualize(simulator):
New terms and important words are shown in bold. Words that you
see on the screen, in menus or dialog boxes, for example, appear in
the text like this: "You can navigate to the Call Graph or the Caller
Map tabs by double-clicking on the rectangles."
Note
Warnings or important notes appear in a box like this.
Tip
Tips and tricks appear like this.
Reader feedback
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Aboab, Raphael, 45
Abraham, Noah, 93
Abraham, Pinhas, 61
Adler, Cyrus, 200 (Note), 292, 340, 344, 356, 369, 370, 371, 375
Agricultural Colonies, 266 ff. (in Canada), 386 (in Argentine), 390
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Bernal, Family, 60
Bernal, physician, 14
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Chicago, Ill., 150 ff., 177, 249, 252, 272, 281, 282, 287, 372, 378,
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Chili, 26
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Cohen, Jacob, 65
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Columbia, 392
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Cromwell, Oliver, 55
D
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